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Velvet assembler
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11	Luo et al. GigaScience 2012, 1:18 http://www.gigasciencejournal.com/contentTECHNICAL NOTE Open Access Add to Reading List Source URL: www.gigasciencejournal.com Language: English Science Genomics DNA sequencing Shotgun sequencing Contig DNA Sequence assembly N50 Velvet assembler Biology Bioinformatics Molecular biology
12	Microsoft Word - leung.339 Add to Reading List Source URL: i.cs.hku.hk Language: English - Date: 2013-05-13 22:14:57 RNA Computational biology Molecular biology Gene expression De novo transcriptome assembly Velvet assembler Contig Sequence assembly Transcriptome Biology Bioinformatics Genetics
13	Microsoft Word - idba_ud-revised-latest.doc Add to Reading List Source URL: i.cs.hku.hk Language: English - Date: 2012-05-03 04:56:22 Genetics Genomics DNA sequencing Velvet assembler Contig Shotgun sequencing Sequence assembly Full genome sequencing N50 Biology Molecular biology Bioinformatics
14	Memory Efficient Minimum Substring Partitioning Yang Li, Pegah Kamousi, Fangqiu Han, Shengqi Yang, Xifeng Yan, Subhash Suri University of California, Santa Barbara {yangli, pegah, fhan, sqyang, xyan, suri}@cs.ucsb.edu A Add to Reading List Source URL: www.vldb.org Language: English - Date: 2013-02-20 04:21:38 DNA sequencing Velvet assembler Comparison of programming languages Substring Hash function Partition Disk partitioning Longest common substring problem Rabin–Karp algorithm Mathematics String Computing
15	Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens Martijn Staats1, Roy H. J. Erkens2,3, Bart van de Vossenberg4, Jan J. Wieringa1,5, Ken Kraaijeveld6, Benjamin Stielow7, Jo´zse Add to Reading List Source URL: www.synthesys.info Language: English - Date: 2014-06-16 11:35:40 Genomics DNA sequencing Molecular biology DNA Genome Contig Full genome sequencing Velvet assembler Sequence assembly Biology Genetics Bioinformatics
16	12 Great Idea Bioinformatics Topic: The Challenge of Assembling Large Genomes by Short Read Sequences Add to Reading List Source URL: www.iis.sinica.edu.tw Language: English - Date: 2014-09-23 23:48:23 Genetics DNA sequencing Genomics Sequence assembly Velvet assembler Full genome sequencing Sequencing Contig Genome Biology Molecular biology Bioinformatics
17	1 A Reference-Free Algorithm for Computational Normalization of Shotgun Sequencing Data C. Titus Brown1,2,∗ , Adina Howe2 , Qingpeng Zhang1 , Alexis B. Pyrkosz3 , Timothy H. Brom1 1 Computer Science and Engineering, M Add to Reading List Source URL: ged.msu.edu Language: English - Date: 2012-07-23 15:57:56 Genetics DNA sequencing Bioinformatics Gene expression RNA Velvet assembler Sequence assembly RNA-Seq Shotgun sequencing Biology Molecular biology Biochemistry
18	Space-efficient and exact de Bruijn graph representation based on a Bloom filter Rayan Chikhi1 and Guillaume Rizk2 1 Computer Science department, ENS Cachan/IRISA, 35042 Rennes, France Add to Reading List Source URL: minia.genouest.org Language: English - Date: 2012-10-09 11:54:51 Bit array Connectivity De Bruijn graph Depth-first search De Bruijn Velvet assembler Koorde Graph theory Hashing Bloom filter
19	Assembly of large genomes from short WGS reads Aleksey Zimin, Guillaume Marcais, Daniela Puiu, Tanja Magoc, Add to Reading List Source URL: pinegenome.org Language: English - Date: 2013-04-17 18:54:50 Computational science Velvet assembler Short Oligonucleotide Analysis Package Molecular assembler Graph De novo transcriptome assembly Bioinformatics Science Sequence assembly
20	Downloaded from genome.cshlp.org on January 28, [removed]Published by Cold Spring Harbor Laboratory Press De novo assembly of human genomes with massively parallel short read sequencing Ruiqiang Li, Hongmei Zhu, Jue Ruan, Add to Reading List Source URL: soap.genomics.org.cn Language: English - Date: 2011-02-15 00:42:20 Molecular biology Genomics DNA sequencing Shotgun sequencing Contig Velvet assembler Sequence assembly Full genome sequencing Genome Biology Bioinformatics Genetics